Scaffold Ga0311371_10617299

Overview

Basic Information

• Taxon OID: 3300029951
• Scaffold ID: Ga0311371_10617299
• Source Dataset Name: III_Palsa_N1 coassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1388
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Abisko, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3535
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007671	Metagenome / Metatranscriptome	347	Y
F096550	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311371_106172992	F007671	N/A	MSAGGPLASPQAIRHVLDNYAYLDDWRTDYRIQSVRSSLNNTHITCIDGAILSYGLLELLFPATKRRLLAIHRRDPKKDEECGHCVTLYWAEDGRIGAFSKSSFTGLGHRDPVFSDETAIATSFAEAYVEMGFEPLYFGVSKLEEVAPEVDWRHGAGALNEISSLLQATYEYGFAIERKDDR
Ga0311371_106172993	F096550	N/A	PPLTRREVNDALNVAKNMTEHLMLFMDGIDTFYGRFATVPRLSCDLNSE